New columns can be added to the document table by adding Meta-Data to documents (see Metadata) The Document Viewer Panel to remove unwanted columns states from this menu. Selecting a column state from here will immediately apply that state to the current table and lock the columns to maintain the new state. contains all of the columns states you have saved. You can give the state a name and it will then appear in the Load Column State. allows you to save the the current state if the columns so you can easily apply it to other tables. You can still change the columns yourself however. Lock Column Order locks the state of the columns in the current table so that Geneious will never modify the way the columns are set up. This menu also contains the following options to help you manage columns: Your preference is remembered so if you turn off a column it will remain hidden in all areas of the program until you show it again. Use the checkboxes to show or hide the columns you wish to display. This gives a popup menu with a list of all the available columns. You can also choose which columns you want to be visible by right-clicking (Ctrl-click on Mac OS X) on any column header or by clicking the small header button above the top right corner of the table. Click on the column header and drag it to the desired horizontal position. For further information see Export to CSV or TSV files. tsv format, enabling you to export sequences and their statistics for a set of documents. The contents of the documents table can be exported in. If you have different types of documents in the same folder, click on the "Icon" column to sort then according to their type. To sort by a given column click on its header. SortingĪll columns can be alphabetically, numerically or chronologically sorted, depending on the data type. To copy a value, right-click (Ctrl+click on Mac OS X) on it, and choose the "Copy name" option, where name is the column name. This is a quick method of extracting searchable information such as an accession number. Certain columns cannot be edited however, eg. Enter the appropriate new information and press enter. To edit a particular value, first click on the document and then click on the column which you want to edit. This is a useful way of editing the information in a document. Values can be typed into the columns of the table. These options vary depending on the type of document.įor information on how to search and filter documents in the Document Table, see Searching and filtering local documents. To view the functions available for any particular document or group of documents, right-click (Ctrl+click on Mac OS X) on a selection of them. This is off by default but can be enabled by going to Tools → Preferences → Appearance and Behavior and checking Show folder path. Standard keyboard controls can also be used (Shift and Ctrl/command click).Ībove the Document Table you can optionally display a navigation bar which shows the folder path to whichever document or folder is currently selected. The easiest way to select multiple documents is by clicking on the checkboxes down the left-hand side of the table. selecting two sequences will show both of them in the sequence view. ![]() ![]() ![]() Selecting multiple documents will show a view of all the selected documents if they are of similar types, e.g. Selecting a document in the Document Table will display its details in the Document View Panel. The type of document is shown by the icon, as detailed below: A local folder may contain any mixture of documents, such as DNA sequences, protein sequences, journal articles, sequence alignments, and trees. ![]() The Document Table displays summaries of each document in a selected folder or folders, presented in table form. You can view options for any selected service with the right mouse button, or by clicking the Options button at the bottom of the Sources Panel in Mac OS X.įor more information on managing folders in the Sources panel, see Organizing your local documents. NCBI databases - Gene, Genome, Nucleotide, PopSet, Protein, Pubmed, SNP, Structure and Taxonomy. Your Local Documents, including Deleted Items. Click this symbol to expand or contract folders. The arrow (>) symbol indicates that a folder contains sub-folders. The Sources Panel displays your stored documents and contains the services Geneious Prime offers for storing and retrieving data. The Geneious main window has five important areas or 'panels'.
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